What kind of probe? Are you preheating before auto levelling? Have you manually calibrated an offset? I used a sheet of paper which was good enough to rough it in and then fine tuned from there. Have you followed marlin’s bed levelling steps?G29 S0 should return mesh results, plonk the reaults of that into a visualisation tool of your choice if you don’t have the ability to visualise with your printer interface (klipper does and if I recall so does octoprint) to help see if you need further adjustment. Definitely do your mesh levelling at your expected print temperatures, give it a good heat soak of like at least 15 minutes before testing, preferably longer but good enough is usually fine.
How did you manually level? I ended up doing a silicone tube mod on my prusa to get the build plate as level as possible, https://lemmy.ca/pictrs/image/79b1c122-6056-4b47-ad71-c178a98e5280.png now within ~0.1mm deviation over the build plate at 90c which is definitely good enough for me. I also moved from a pinda probe to a tap probe, induction probes are definitely fine imo, you just need to tune the offset