NicoleCRust,
@NicoleCRust@neuromatch.social avatar

Looking for paper leads on: a genetic network w/ attractor states linked to brains

I'm fond of the approaches in this paper:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2571012/

The gist here is to model a genetic network as a dynamical system with two attractor states (in this case, it's leukemia and the states are apoptosis on-versus-off).

I'm looking for leads to papers that apply this type of approach to model genetic networks (not neural circuits) that have something a bit more to do with the brain; ideally not cancer.
(This is not my field). Huntington's? Fragile X? Anything neuron related?

Thanks in advance!

PeterKRogan,

@NicoleCRust Take a look at: Bagchee‐Clark, Ashis J., et al. "Pathway‐extended gene expression signatures integrate novel biomarkers that improve predictions of patient responses to kinase inhibitors." MedComm 1.3 (2020): 311-327.(https://onlinelibrary.wiley.com/doi/pdf/10.1002/mco2.46). We found likely attractors in pathway extended chemotherapy signatures.(and cite Kauffman): .

NicoleCRust,
@NicoleCRust@neuromatch.social avatar

@PeterKRogan
Really great - thank you!!

veraksa,

@NicoleCRust Here is one that comes to mind: Hippo pathway controls a bistable switch in photoreceptor type determination in the Drosophila retina:
https://pubmed.ncbi.nlm.nih.gov/23989952/

NicoleCRust,
@NicoleCRust@neuromatch.social avatar

@veraksa
Thank you!!

sfmatheson,
@sfmatheson@fediscience.org avatar

@NicoleCRust Even if you don't find what you're looking for (cue U2), a browse through Hana El-Samad's work is likely to inspire 🙂

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