mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for South Australia.

EG.5.* "Eris" (33%) appears to have become dominant over "Deltacron" XBC.* (24%) and XBB.1.16.* "Arcturus" (23%), in a somewhat chaotic mix.

Sample volumes seem representative up to October 3.

#COVID19 #Australia #SA #Adelaide #EG_5 #Eris #XBC #Deltacron #XBB_1_16 #Arcturus @auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for New South Wales, Australia.

"Deltacron" XBC.* (23%) is rising sharply to challenge the dominance of XBB.1.16.* "Arcturus" (29%).

XBB.2.3.* "Acrux" (15%) is also rising quite rapidly.

The mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to June 19.

#COVID19 #Australia #NSW #Sydney #XBC #Deltacron #XBB_2_3 #Acrux #XBB_1_16 #Arcturus @auscovid19
🧵

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for Victoria.

XBB.1.16.* "Arcturus" (34%) is taking it's turn to dominate, following XBB.1.9.* "Hyperion" (24%).

XBB.1.5.* "Kraken" (13%) has been declining steadily.

The mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

@auscovid19
🧵

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for the Australian Capital Territory (ACT).

XBB.1.9.* "Hyperion" (29%) and CH.1.1.* "Orthrus" (29%) are battling for dominance.

XBB.1.16.* "Arcturus" (18%) and "Deltacron" XBC.* (13%) are still quite significant.

The chaotic mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to June 1.

@auscovid19

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for Western Australia.

XBB.1.9.* "Hyperion" (40%) and XBB.1.16.* "Arcturus" (31%), appear to be battling for dominance

The sample volumes seem representative up to June 1.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to brisbane
@mike_honey_@aus.social avatar

Here's the latest variant picture for Queensland, Australia.

It's difficult to interpret as sample volumes are very low and patchy. There's a lengthy gap where <10 samples were shared, between May 13 and May 24.

XBB.1.9.* "Hyperion" (24%) may have returned to dominance. It looks like the many sub-lineages including EG.* and FL.* are making a contribution

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

image/png

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for New South Wales, Australia.

XBB.1.16.* "Arcturus" (32%) is taking it's turn to dominate, following XBB.1.9.* "Hyperion" (25%).

XBB.1.5.* "Kraken" (14%) has been declining steadily.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to June 5.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to australia
@mike_honey_@aus.social avatar

Here's the latest variant picture for Victoria.

XBB.1.16.* "Arcturus" (34%) is taking it's turn to dominate, following XBB.1.9.* "Hyperion" (24%).

XBB.1.5.* "Kraken" (12%) has been declining steadily.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to June 5.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to Malaysia
@mike_honey_@aus.social avatar

Here's the latest variant picture for Malaysia.

XBB.1.16.* "Arcturus" (39%) now looks dominant over XBB.1.9.* "Hyperion" (22%).

XBB.2.3.* "Acrux" (11%) is rising, and might be the next to challenge.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to May 18, but look a bit patchy.

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to brisbane
@mike_honey_@aus.social avatar

Here's the latest variant picture for Queensland, Australia.

XBB.1.16.* "Arcturus" (32%) has surged to dominance.

The XBB.1.9.* "Hyperion" (24%) and XBB.1.5.* "Kraken" (19%) variants are still significant.

The "Deltacron" XBC.* variant (11%) and CH.1.1.* "Orthrus" (14%) are still in the frame.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The vigorous mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to May 3. There are almost no sequences shared since that date - hopefully only a temporary bottleneck.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for New South Wales.

XBB.1.16.* "Arcturus" (29%) continues to battle XBB.1.9.* "Hyperion" (28%) for dominance.

XBB.1.5.* "Kraken" (18%) has been declining steadily, but is still significant.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The vigorous mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem somewhat representative up to May 25, although the volume appears to be declining, unfortunately.

@auscovid19
🧵

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for the Australian Capital Territory (ACT).

XBB.1.9.* "Hyperion" (23%) has rebounded back to dominance.

There's been a recent surge from the last non-recombinant clan: CH.1.1.* "Orthrus" (18%).

The XBB.1.5.* "Kraken" clan (18%) is still significant.

XBB.1.16.* "Arcturus" (17%) is also quite prominent.

"Deltacron" XBC.* (16%) has been growing recently.

Be alert for conjunctivitis symptoms, particularly associated with the Arcturus variant.

The chaotic mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem representative up to May 17.

@auscovid19

mike_honey_, (edited ) to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for the Australian Capital Territory (ACT).

There's been a recent surge from the last non-recombinant clan: CH.1.1.* "Orthrus" (28%).

XBB.1.16.* "Arcturus" (24%) is also very prominent.

"Deltacron" XBC.* (18%) has been growing recently.

XBB.1.9.* "Hyperion" (14%) has falled sharply from dominance.

The XBB.1.5.* "Kraken" clan (12%) has fallen but is still significant.

The chaotic mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem somewhat representative up to May 12.

@auscovid19

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for New South Wales.

XBB.1.16.* "Arcturus" (28%) has closed the gap with XBB.1.9.* "Hyperion" (30%) as they battle for dominance.

XBB.1.5.* "Kraken" (20%) has been declining steadily, but is still significant.

The vigorous mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

The sample volumes seem somewhat representative up to May 16, although the volume appears to be declining, unfortunately.

#COVID19 #NSW #Sydney #XBB_1_9 #Hyperion #XBB_1_16 #Arcturus #XBB_1_5 #Kraken @auscovid19
🧵

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for the Northern Territory, Australia.

After a gap of over a year, a couple of samples were recently shared from the NT.

The 2 samples are variants that are common elsewhere in Australia - XBB.1.16.* "Arcturus" and XBB.1.5.* "Kraken".

I've been banging on about this for over a year now, so it's great to see data sharing restart. Hopefully that can continue so we get a more accurate picture of the unique mix in this remote area with international air and sea ports.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for Western Australia.

The XBB.1.9.* "Hyperion" clan (31%) is battling with XBB.1.5.* "Kraken" variant (23%) for dominance.

XBB.1.16.* "Arcturus" (20%) is growing quite rapidly. Be alert for conjunctivitis symptoms, which seem more common with that variant.

The variant mix in WA continues to be uniquely chaotic, reflecting it's situation as a global crossroads. Even WA residents who've been racking up regular reinfections are likely to meet globally obscure variants capable of overcoming their immunity.

The sample volumes seem representative up to May 12.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for Tasmania.

XBB.1.9.* "Hyperion" (38%) and XBB.1.16.* "Arcturus" (23%) have mostly displaced XBB.1.5.* "Kraken" (23%).

The vigorous mix of very different variants poses a raised immediate re-infection risk for anyone relying on natural immunity from a recent infection.

There's still a bit of XBF.* "Bythos" and CH.1.1.* "Orthrus" around, which have mostly disappeared from the rest of the world.

The sample volumes seem representative up to May 5. This is a very welcome update, after a long pause of around 6 weeks.

@auscovid19

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for Queensland, Australia.

The XBB.1.5.* "Kraken" variant (23%) appears to be fading against the dual challenge of XBB.1.9.* "Hyperion" (25%) and XBB.1.16.* "Arcturus" (20%).

The "Deltacron" XBC.* variant (10%) has fallen back, after showing some promise in late March.

The sample volumes seem representative up to April 27.

Interactive genomic sequencing dataviz, code, acknowledgements and more info here:
https://github.com/Mike-Honey/covid-19-genomes#readme

@auscovid19

mike_honey_, to auscovid19
@mike_honey_@aus.social avatar

Here's the latest variant picture for Queensland.

The XBB.1.5.* "Kraken" clan (29%) has remained dominant.

The CH.1.1 "Orthrus" clan (18%) appears to be fading.

The "Deltacron" XBC.* clan (17%) is rising sharply, driven by the new XBC.1.6.3 sub-lineage (see below).

XBB.1.16.* "Arcturus" (11%) appeared in late March and is growing steadily.

The sample volumes seem representative up to April 5, which is lagging NSW by several weeks.

@auscovid19
🧵

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