pastelbio, to random

168 proteomic databases/scripts/programs added to Pastel's Resource page in 2023

Here's a random selection from the webpage http://bit.ly/1J4g3CE

https://github.com/mkorpar/swsharp | SW# | library for sequence alignment based on CUDA enabled GPUs


-other

jtr, to emacs
@jtr@fosstodon.org avatar

I just watched Prot’s excellent video about abrrevs, and I feel my “Emacs IQ” has expanded a bit.

Here are the notes from my settings:

https://taonaw.com/2024/02/10/emacs-abbrevs-hacks.html

pastelbio, to random

Rendering protein structures inside cells at the atomic level with Unreal Engine https://www.biorxiv.org/content/10.1101/2023.12.08.570879v1.full.pdf+html


-preprint

pastelbio, to random

Do you enjoy PastelBio's proteomics posts ? each morning (timeline, conference, fav-post, software-resource), then articles, preprints, blogs, jobs, re-posts etc.,


-other
1/3

pastelbio, to random

Structure prediction of alternative protein conformations https://www.biorxiv.org/content/10.1101/2023.09.25.559256v1


-preprint

louis, to emacs
@louis@emacs.ch avatar

4th session with Prot today. :emacs:

(I almost overslept, woke up 10 minutes before. Prot probably thought I was having a bad hair day.)

If you are following this, please consider trying out his services for your own needs:
https://protesilaos.com/coach/

Or, if you use any of Prot's excellent packages or themes, consider donating if you can:
https://github.com/sponsors/protesilaos

So let's start.

Today we setup Denote and went through some of its main features. What I like about it:

  • It is major mode agnostic. You can use it with Markdown, Org, Plaintext or whatever you want
  • It can be used to organize any kind of files (i.e. your picture folder). Denote happily renames and tags your files any way you want
  • Denote supports Backlinks. You can even automatically insert the backlinks into a note using Dynamic Blocks. Example:

(#)+BEGIN: denote-backlinks
(#)+END:

By executing this block the backlinks are automatically inserted into the note. You have to put this in your config to make this work:

(require 'denote-org-dblock)

  • Denote does not implement features that are already in Emacs, i.e. Search. That's my challenge I had with Denote, but as it turned out, with a package like consult you can easily search either by filename with consult-find or through the content of all notes with consult-ripgrep.

While doing this we discovered that global-emojify-mode interfered with minibuffer completions so that Emacs always froze for a few seconds when starting a consult-find. We found it out by using the amazing Emacs profiler (profiler-start). So if you experience this, consider turning on emojify-mode selectively.

In our next session we'll talk about "Organizing with notes" on a non-technical level. Prot will share some of his experiences, because I'm notoriously disorganized.

Note: I do not receive any benefits by posting about this.

johnhamelink, to emacs

“Dogma is the misrepresentation of a context-dependent insight as a universal truth.”

Wonderfully put

https://protesilaos.com/codelog/2021-09-22-live-stream-emacs-unix/

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