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rOpenSci

@rOpenSci@hachyderm.io

We are a community that fosters a culture that values open and reproducible research using shared data and reusable software. We develops #RStats based tools and social infrastructure to facilitate open science and access to open data.

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rOpenSci, to rstats Spanish
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📦 [A package a day - Literature 2]

Today's Literature package is europepmc

R Interface to the Europe PubMed Central RESTful Web Service
🙏 Maintained by Najko Jahn
📝 https://docs.ropensci.org/europepmc/

Look how @zhanghe_goh and others uses {europepmc} in covidpreprints.com using europepmc and rAltmetric
📓 https://discuss.ropensci.org/t/covidpreprints-com-using-europepmc-and-raltmetric/2210




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Taxonomy 6]

Today's Taxonomy package is taxadb

A High-Performance Local Taxonomic Database Interface
🙏 Maintained by @cboettig
📝 https://docs.ropensci.org/taxadb/

Look how @gavin uses {taxadb} to query taxonomic information in ecology projects
🗺️ https://discuss.ropensci.org/t/using-taxadb-to-query-taxonomic-information-in-ecology-projects/2046




@rstats

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📢 Announcement!

From June 2023 we stop interacting on Twitter. We have many communication channels for safe and friendly exchange.

💌Newsletter: https://ropensci.org/news/

💬Forum: https://discuss.ropensci.org

💻 Community Calls: https://ropensci.org/commcalls/

🧰 Social Coworking and Office Hours: https://ropensci.org/events/

Learn more in this blog post: https://ropensci.org/blog/2023/06/14/ropensci-communication-channels-en/


@rstats

rOpenSci, to rstats Spanish
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This Giving Season, consider donating to rOpenSci to support our mission of empowering Open Science.

By supporting us, you’re not just donating; you’re contributing to a community that’s breaking down barriers, creating opportunities, and shaping the future of open and reproducible science for everyone.

Join us in this vital mission today! 🙏

✍️ Read more here: https://ropensci.org/blog/2023/11/21/donation-2023/

📌 You can donate here: https://ropensci.org/donate/

@rstats

rOpenSci, to rstats Spanish
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rOpenSci Coworking and Office Hours coming up in an hour!

Today's Theme: Working with APIs with cohost @jonthegeek

Tuesday January 9th 14:00 European Central (13:00 UTC)

https://ropensci.org/events/coworking-2024-01


@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Literature 16]

Today's Literature package is tabulizer

Provides R bindings to the Tabula java library, which can be used to computationaly extract tables from PDF documents
🙏 Maintained by Mauricio Vargas
📝 https://docs.ropensci.org/tabulizer/

Look how @fernandobarbalho uses {tabulizer} to data extraction on black Marvel and DC heroes
📓 https://discuss.ropensci.org/t/extracao-de-dados-sobre-herois-negros-e-negras-da-marvel-e-dc/2952




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Geospatial 14]

Today's Geospatial package is rnaturalearthdata

An R package to store data for the rnaturalearth package
🙏 Maintained by @southmapr
📝 https://docs.ropensci.org/rnaturalearthdata/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to random
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📣 Leadership changes at rOpenSci

After 13 years at the helm of rOpenSci, our founding executive director Karthik Ram @inundata is stepping down. Noam Ross @noamross rOpenSci’s current lead for peer review, will be our new Executive Director.

Karthik will remain a key advisor to rOpenSci. We thank him for his years of leadership and service to the community! 🙌

Read Karthik’s farewell post: https://ropensci.org/blog/2024/03/29/from-the-founding-director-my-farewell-to-ropensci/

and Noam’s post about his new role: https://ropensci.org/blog/2024/03/29/hello-from-our-new-executive-director/

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 22]

Today's Computing Infrastructure package is charlatan

Make Fake Data
🙏 Maintained by @rmhogervorst
📝 https://docs.ropensci.org/charlatan/

Check out this article: Contributing to {charlatan}
💻 https://docs.ropensci.org/charlatan/articles/contributing.html




@rstats

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📦 [A package a day - Computing Infrastructure 45]

Today's Computing Infrastructure package is osfr

Provides a suite of functions for interacting with the Open Science Framework (OSF)
🙏 Maintained by Aaron Wolen
📝 https://docs.ropensci.org/osfr/

Check out this article: Authenticating {osfr}
💻 https://docs.ropensci.org/osfr/articles/auth.html




@rstats

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Coworking and Office Hours next week!

Theme: R in the Wild

Tuesday June 4th 09:00 Australian Western (01:00 UTC)

Join @ernestguevarra, Tomás Zaba, Nicholus Tint Zaw, and Zython Paul Lachica and @steffilazerte

  • General coworking
  • Work on some of your own workflows
  • Explore how you might incorporate R workflows in your own work
  • Chat with Ernest and other attendees and discuss strategies for incorporating R workflows at your place of work.

https://ropensci.org/events/coworking-2024-06


@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 47]

Today's Computing Infrastructure package is Data PackageR

Construct Reproducible Analytic Data Sets as R Packages
🙏 Maintained by Marie Vendettuoli
📝 https://docs.ropensci.org/DataPackageR/

Look how @vizowl uses DataPackageR to create data package Pandemic Papers with Chris Knox
💻 https://discuss.ropensci.org/t/using-datapackager-to-create-data-package-pandemic-papers-with-chris-knox/2131




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 44]

Today's Computing Infrastructure package is gistr

Work with GitHub Gists
🙏 Maintained by @sckottie
📝 https://docs.ropensci.org/gistr/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to rstats Spanish
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[help wanted] rOpenSci packages are looking for some help! 🙏

📦 tidyqpcr (maintained by @ewjwallace)

Check out the issue by Samuel Joseph Haynes labelled 'help wanted':
"Check the suitability of the vignette colour scheme for accessibility" at https://github.com/ropensci/tidyqpcr/issues/94

Check out the issue by @rmagno labelled 'help wanted':
"Import RDES format" at https://github.com/ropensci/tidyqpcr/issues/197


@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 51]

Today's Computing Infrastructure package is jenkins

Simple Jenkins Client for R
🙏 Maintained by @jeroenooms
📝 https://docs.ropensci.org/jenkins/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 48]

Today's Computing Infrastructure package is baRcodeR

Label Creation for Tracking and Collecting Data from Biological Samples
🙏 Maintained by Robert Colautti
📝 https://docs.ropensci.org/baRcodeR/

Check out this article: Using {baRcodeR} with command line prompts
💻 https://docs.ropensci.org/baRcodeR/articles/Using-baRcodeR.html




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 46]

Today's Computing Infrastructure package is data pack

A Flexible Container to Transport and Manipulate Data and Associated Resources
🙏 Maintained by Matthew B. Jones
📝 https://docs.ropensci.org/datapack/

Check out this article: {datapack} R Package Overview
💻 https://docs.ropensci.org/datapack/articles/datapack-overview.html




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 37]

Today's Computing Infrastructure package is postdoc

Minimal and Uncluttered Package Documentation
🙏 Maintained by @jeroenooms
📝 https://docs.ropensci.org/postdoc/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 43]

Today's Computing Infrastructure package is prismjs

Server-Side Syntax Highlighting
🙏 Maintained by @jeroenooms
📝 https://docs.ropensci.org/prismjs/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 38]

Today's Computing Infrastructure package is universe

Tools for Working with R-universe
🙏 Maintained by @jeroenooms
📝 https://docs.ropensci.org/universe/

Do you use this package? Tell us about it!
🗺️ https://discuss.ropensci.org/c/usecases/10




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 41]

Today's Computing Infrastructure package is skimr

Compact and Flexible Summaries of Data
🙏 Maintained by @elinwaring
📝 https://docs.ropensci.org/skimr/

Check out this article: {Skimr} defaults
💻 https://docs.ropensci.org/skimr/articles/Skimr_defaults.html




@rstats

rOpenSci, to rstats Spanish
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📦 [A package a day - Computing Infrastructure 39]

Today's Computing Infrastructure package is ruODK

An R Client for the ODK Central API
🙏 Maintained by Florian W. Mayer
📝 https://docs.ropensci.org/ruODK/

Check out this article: Comparison of related software packages
💻 https://docs.ropensci.org/ruODK/articles/comparison.html




@rstats

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📦 [A package a day - Computing Infrastructure 42]

Today's Computing Infrastructure package is tokenizers

Fast, Consistent Tokenization of Natural Language Text
🙏 Maintained by Lincoln Mullen
📝 https://docs.ropensci.org/tokenizers/

Check out this article: Introduction to the {tokenizers} Package
💻 https://docs.ropensci.org/tokenizers/articles/introduction-to-tokenizers.html




@rstats

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📦 [A package a day - Computing Infrastructure 40]

Today's Computing Infrastructure package is gitcellar

Helps Download Archives of GitHub Repositories
🙏 Maintained by @maelle
📝 https://docs.ropensci.org/gitcellar/

Check out this example from @grusonh: Backing up GitHub organisation with {gitcellar}
💻 https://discuss.ropensci.org/t/backing-up-github-organisation-with-gitcellar/3153




@rstats

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rOpenSci is proud to welcome a new package to our software suite!🎉

dendroNetwork: Create Networks of Dendrochronological Series using Pairwise Similarity by @RonaldVisser
Docs: https://docs.ropensci.org/dendroNetwork
Peer review: https://github.com/ropensci/software-review/issues/627
🙏 Thank you to reviewers @kaija_bean and Zach Gajewski!


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