What exactly is your use case for treating np.bool_ and bool as interchangeable? If np.bool_ isn’t a subclass of bool according to Python itself, then allowing one to be used where the other is expected just seems like it would prevent mypy from noticing bugs that might arise from code that expects a bool but gets an np.bool_ (or vice versa), and can only handle one of those correctly.
mpy and numpy are opensource. You could always implement the fix you need yourself ?