@BorisBarbour@mastodon.social
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BorisBarbour

@BorisBarbour@mastodon.social

Neuroscience (CNRS, ENS); pubpeer.com; peeriodicals.com; referee3.org. Views my own. Inactive https://mastodon.social/@BorisBarbour on Twitter

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neuralreckoning, to random
@neuralreckoning@neuromatch.social avatar

UX peeve. Lamps that you have to tap repeatedly to adjust brightness so that if you want it to get less bright you have to cycle through more bright first. Bring back clunky analogue switches. Touch interface is bad for everything except a phone.

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@neuralreckoning @elduvelle

Optimised for cost...

Oddly, I don't much mind the one I have.

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@neuralreckoning @elduvelle

Any self-respecting bean-counter needs only the smallest difference! However, having just sourced components for an instrument box, I'd say that large, physical, 3d things are becoming a good deal more expensive, relatively, also because they are used much less.

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@neuralreckoning @elduvelle

Totally. But how to move away from purchase price as the main differentiator?

Only vaguely related, but I was day-dreaming that in a move to improve product quality the EU imposed a standard guarantee of 5 years instead of 2.

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

Not sure I would have gone with the "Elisabeth Bik is an unreliable judge of blot duplications" defence. Twice.

https://pubpeer.com/publications/98784D9AF9B1E8B5B1818E516B5001

https://pubpeer.com/publications/52D37ED6C4D16682694521FA04B2BA

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

Really important because of Ukraine, but it also feels like a bubble is bursting.

https://newrepublic.com/article/180808/mike-johnson-pro-ukraine-speech-maga-deep-state-lie

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

Bastards. Gratuitous, self-harming cruelty from the UK government.

https://www.theguardian.com/commentisfree/2024/apr/09/uk-visa-rules-families-income-threshold

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

You know how most papers suffer in journal clubs? But probably the authors have answers for many of the criticisms? Well, one of the hopes in creating PubPeer ("The online journal club") was to be a forum where authors could defend their papers. So it's great to see Beth Stevens replying to some accumulated questions on her work about synapse-pruning by microglia.

https://pubpeer.com/publications/9775AFC4086EF678B10238F0594B07#19

We continue to believe that public confrontation of ideas will accelerate scientific progress.

glynmoody, to Guns
@glynmoody@mastodon.social avatar

Video shows California police fatally shooting teenager who was reported kidnapped - https://www.theguardian.com/us-news/2024/apr/01/california-police-video-shooting-15-year-old-girl-savannah-graziano "Savannah Graziano, 15, shot by sheriff’s deputies in 2022 while unarmed and following instructions to move toward them"

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@glynmoody

Absolutely insane. All of it: the violence, the incompetence, the cover-up.

deevybee, to Pubtips
@deevybee@mastodon.social avatar
BorisBarbour,
@BorisBarbour@mastodon.social avatar

@MarkHanson @deevybee @albertcardona

I'm pretty certain they publish (or at least have published in the past) quite a transparent breakdown of their costs. I'll see if I can find it...

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

I'm genuinely curious to discover whether Nature Neuroscience have consulted with a statistician.

https://pubpeer.com/publications/98FCB4581543F4A4D1BE2F386D6BDA#35

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar
andrewplested, to random
@andrewplested@mstdn.science avatar

Me: 10.7Mb PDF, please reduce the file size.

Adobe Acrobat: OK, 11 Mb

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@steveroyle @andrewplested

There is also a ghostscript command line for different pdf compression levels.

gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=output.pdf input.pdf

where "screen" is probably too compressed. Alternatives are "ebook", "printer", "prepress". (It may be possible to bump the CompatibilityLevel to 1.5). Not very fine-grained, but it can compress a lot and all elements are compressed consistently for the output

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar
BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

This investigation of Ranga Dias' superconductivity publications is remarkable for multiple reasons.

https://www.nature.com/articles/d41586-024-00716-2

Nobody comes out of it well, but Nature are much more transparent about the editorial process than I can ever remember. (It's a little unclear if that was spontaneous, but, if not, the frequently claimed independence of Nature News came good.)

Thread. /1

BorisBarbour,
@BorisBarbour@mastodon.social avatar

The "research" is at times risible. Key experimental results appeared suddenly in a manuscript version upon which lab members were given a couple of hours to comment before submission to Nature.

"When the students asked Dias about the stunning new data, they say, he told them he had taken all the resistance and magnetic-susceptibility data before coming to Rochester."

Just nonchalantly sitting on proof of room-temperature superconductivity for a few years, as one does. /2

BorisBarbour,
@BorisBarbour@mastodon.social avatar

The students are definitely not the villains of the piece, but if they "did not suspect misconduct at the time" and "trusted their adviser", they seem somewhat naive under the circumstances. /3

BorisBarbour,
@BorisBarbour@mastodon.social avatar

For the first paper, Nature engaged three referees and there were three rounds of review. One referee was strongly positive, the other two did not support publication. Nature went ahead anyway.

I can't think of a previous black on white example where Nature have admitted allowing impact to override quality, although that's always been the tacit implication of their editorial policy. And this is exactly the result they risk with that policy. /4

BorisBarbour,
@BorisBarbour@mastodon.social avatar

Nature did try to deal with the mess when they received complaints about the data, and they ended up retracting the paper. Gone are the days of stonewalling all such problems, and good riddance.

Procedures can certainly be improved, though. Co-authors (students) had been kept out of the loop during the investigation, which they only discovered when asked if they agreed with the retraction. Obviously they should have been contacted as soon as the investigation began. /5

BorisBarbour,
@BorisBarbour@mastodon.social avatar

Incredibly, Nature then accepted another paper from Dias about a new superconducting material.

EiC Magdalena Skipper: "Our editorial policy considers every submission in its own right”. That policy is shown to be dangerously naive.

Also: "decisions should be made on the basis of the scientific quality, not who the authors are." This paper was an embarrassing failure of evaluation. How do Nature aim to improve their processes? /6

BorisBarbour,
@BorisBarbour@mastodon.social avatar

Nature were not helped by the institution, Rochester University. They conducted four investigations and only the fourth identified any problems. During none of the first three were any of the students contacted! Simply pathetic. Nobody, including journals, should rely on (non-transparent) institutional investigations. /7

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@moritz_negwer

Short-term and short-sighted management of reputation and finances.

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@MarkHanson @brembs

The experts they showed the reports to for this article shared your view and don't appear to have found the decision shocking.

Still, deciding to run with one positive report seems dangerous.

And your comment raises the interesting question of the level of expertise of the professional editors.

BorisBarbour,
@BorisBarbour@mastodon.social avatar

@MarkHanson @brembs

Does the policy pass the honesty test: would they publish if they had to post the referee reports alongside, with only a single positive one? I'm guessing no.

I think Rochester and the funders come out of this affair far worse than Nature. But there are plenty of things Nature can improve upon:

  • do more to resolve scientific issues between referees before accepting
  • bear in mind track records for quality/integrity
  • contact all authors in an investigation
BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

Volunteer outsiders doing a far better job than French authorities and institutions...

https://www.science.org/content/article/failure-every-level-how-science-sleuths-exposed-massive-ethics-violations-famed-french

BorisBarbour, to random
@BorisBarbour@mastodon.social avatar

Ouch!

That modern decrease of disruptive research?

"A reanalysis of the data in the paper shows that the main results of the paper are likely to due a bug which affected inclusion of papers"

https://pubpeer.com/publications/E728CA80B5E267FA3F6C6B318BEEDA

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