elduvelle,
@elduvelle@neuromatch.social avatar

What do people use nowadays as #RSSReaders? (Does the concept even still exist?)

It’s to keep track of relevant #ResearchPapers of interest as my main source used to be… Twitter and ResearchGate, which I’ll both be leaving before 2024

nlb,

@elduvelle

RSS is still very much alive. For your specific use case I suggest you try Zotero rather than a general RSS reader.

You can create a custom search on PubMed for example, and get an RSS feed for that custom search directly into Zotero where you can interact with each relevant search result (read, add to your library and then tag, comment etc.).

ClaireFromClare,
@ClaireFromClare@h-net.social avatar

@nlb Thanks, I wasn't aware of this capability. I found the instructions here: https://www.zotero.org/support/feeds
@elduvelle

elduvelle,
@elduvelle@neuromatch.social avatar

@ClaireFromClare @nlb wow, I had no idea had an integrated RSS reader! That might be exactly what I need… especially now that they have an Android version! Thanks both!

iris,

@elduvelle Feedly, although I’m looking for a replacement since it surfaced that they’re (explicitly and deliberately) aiding union-busting. Very annoyed since it was a pretty good browser plugin and app.

elduvelle,
@elduvelle@neuromatch.social avatar

@iris Ugh, that’s annoying… I hope you find something else. There’s quite a lot to work with in the answers to this post (if you can see them)!

ClaireFromClare,
@ClaireFromClare@h-net.social avatar

@elduvelle I now use Thunderbird for RSS, as well as for email, on Windows Mac & Linux. It helpfully suggests possible feed URLs from webpages which don't mention the possibility.

I'm delighted to rediscover & would like to know more about how to ensure websites are RSS-friendly... advice welcome!

jonny,
@jonny@neuromatch.social avatar

@elduvelle a lot of journals have shut down their RSS feeds. I think your best bet for papers might be something like openalex, dimensions or (unfortunately) scopus, but i bet the librarians know better

elduvelle,
@elduvelle@neuromatch.social avatar

@jonny oooh really? 😭 why have they shut them down? Is nobody using them anymore to follow the literature?

I can maybe do with but I would feel better with a less fancy (/“AI”) alternative. I’ll look into those things you mention. Thank you ☺️

andreatitolo,
@andreatitolo@archaeo.social avatar

@elduvelle take a look also at https://docs.rsshub.app/routes/journal, they are not all operational but at least they’ll tell you more or less which journals might expose the rss feed. But @jonny is right and most seems to do everything to prevent using rss. Springer still has its old search with the rss available, but the new one does not expose any rss to my knowledge (https://archaeo.social/@andreatitolo/111623386528276808) sorry for the self-reference

elduvelle,
@elduvelle@neuromatch.social avatar

@andreatitolo @jonny that’s very useful, thanks!

jonny,
@jonny@neuromatch.social avatar

@elduvelle same reason that all the "enhanced PDF readers" exist despite everyone hating them and why all the paper metadata is technically uncopyrightable but bound by proprietary databases (and why openalex is necessary in the first place): gotta drive people onto the surveillance mediums. The papers that you read, how long you read them, what you click on, what you search for, etc. is extremely valuable "research intelligence" data that is actively and presently repackaged and sold as products like SciVal for eg. recommending maximally fundable topics to researchers and funding agencies, or to pharmaceutical agencies to poach the competition, etc. Semantic Scholar is "AI" in the sense that any natural language parsing algorithm is "AI," as far as I know it isn't part of the surveillance apparatus directly, although AI2 seems passively headed in that direction.

elduvelle,
@elduvelle@neuromatch.social avatar

@jonny Ugh yeah… well I hope that RSS feeds for scientific journals make a comeback somehow!

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@elduvelle @jonny I use RSS feeds for some journals but they're mostly pretty crap. Sometimes just showing the title of the paper and no abstract. Sometimes (extraordinarily) just having an entry for each paper that doesn't even give the title, just the name of the journal. I suspect in these cases the journal may not even know it has an RSS feed it's just some default configuration in software that nobody understands. I've had a much better time just using semantic scholar to be honest.

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@elduvelle @jonny fwiw I use feedly but it's on my to do list to switch to something else because apparently they've been up to no good (I've forgotten what exactly but I'm sure past-Dan had good reasons).

elduvelle,
@elduvelle@neuromatch.social avatar

@neuralreckoning @jonny this may be why?:
https://firefish.tech/notes/9nsf40j3k29jdqur
(Apparently they might be supporting union-busting)

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@elduvelle @jonny that rings a bell, yes!

jonny,
@jonny@neuromatch.social avatar

@neuralreckoning
@elduvelle
This site says it is a big collection of feeds, but I cant actually figure out how to find the feed URLs. I used to use it when I was actually trying to keep up with the literature tho, so if its still running, even if you cant get RSS feed it still delivers you an email with a bunch of journal ToCs.
https://www.journaltocs.ac.uk/index.php?action=login

Nowadays I would probably just want to write something that grabs the latest openalex snapshot and does some simple comparisons with my zotero library - find me works that cite things in my library, from authors I frequently read, take vector embeddings of abstracts using a language model, etc., Weight by the number of times I have read something/how many highlights I made.

In the absence of real organization, paper discovery is genuinely useful and necessary tooling to make, but unfortunately you just cant ever trust any recommendation algo as a service products.

roaldarboel,

@jonny @neuralreckoning @elduvelle I tried to see if it was possible to automatically pull URLs from there but stalled - unfortunately don’t think it’s possible. I started building an R Shiny app (https://roaldarbol.shinyapps.io/rss-journals/)but it would have to rely on a database of URLs…

jonny,
@jonny@neuromatch.social avatar

@roaldarboel
@neuralreckoning @elduvelle
Yeah there are RSS links for some of the journals, but not all, and their export link is broken. I know for sure that some of the journals they list there dont have RSS feeds, so they must be doing something else. Not to repeat myself too much but ya I think aggregators like openalex/crossref would be the way to go here

roaldarboel,

@jonny @neuralreckoning @elduvelle Wait, does openalex have their RSS links too?!

jonny,
@jonny@neuromatch.social avatar

@roaldarboel
@neuralreckoning @elduvelle
No no, just that they or another aggregator can replace (ish) an RSS feed with their API

jonny,
@jonny@neuromatch.social avatar

@roaldarboel @elduvelle now I want to make an RSS publisher for journals, it shouldnt be that hard

jonny,
@jonny@neuromatch.social avatar

@roaldarboel
@elduvelle
Should be just like an interface that lets you start typing a journal name, querying crossref for completions. When a journal is selected, create a feed for it by creating a new db table and adding it to a list of indexed servers. Query crossref daily to check for changes.

That sounds like a one evening programming challenge, im searching around rn if anyone has done it and if they dont ill give it a go tonight

jonny,
@jonny@neuromatch.social avatar

@roaldarboel @elduvelle trying to pick up yet another framework so spent awhile wandering around FastAPI and SQLModel and HTMX, but we are now at the fun part where we are getting metadata and just need to make the feed model and add a routes endpoint. pausing for food https://github.com/sneakers-the-rat/journal-rss

jonny,
@jonny@neuromatch.social avatar

@roaldarboel @elduvelle crossref identifies journals by ISSN in their API. not all journals have an ISSN - notably journals that have never published anything. most journals have two ISSNs - digital and print. sometimes those ISSNs are the same ISSN, sometimes they're not. metadata rocks.

jonny,
@jonny@neuromatch.social avatar

@roaldarboel @elduvelle actually gonna call it for the night but ya basically just need to make a route that's /journals/{issn}/ that shows an individual journal feed, button to request/start a feed, populate papers from crossref, format into RSS, make daily task to refresh tracked journals, done! probably 2 more hours for core function and 2 for plausible ux

roaldarboel, (edited )

@jonny @elduvelle Jonny, please never change! This is the kind of adversarial interob the world needs more of! Would be amazing if it can be used to generate a list, either CSV or OPML, ready to import into your favourite RSS aggregator.

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@roaldarboel @jonny @elduvelle this would be seriously useful. Maybe neuromatch could host?

jonny,
@jonny@neuromatch.social avatar

@neuralreckoning
@roaldarboel @elduvelle
I was gonna put it at feeds.neuromatch.social yes :)

neuralreckoning,
@neuralreckoning@neuromatch.social avatar
jonny,
@jonny@neuromatch.social avatar

@roaldarboel @elduvelle crawling along bc i keep realizing i have only hours of precious holiday break left, but made a very low-rent roadmap in case ya wanna come play

roaldarboel,

@jonny @elduvelle Can you enable discussions on the repo, pleeeease? ;) Then we could discuss feature set and UI/UX there.

jonny,
@jonny@neuromatch.social avatar

@roaldarboel
Done :) and I can give you push privs if youd like

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@jonny @roaldarboel @elduvelle keyword filters? I'd love to have a feed of all the journals that might have papers relevant to me but with certain topics I know I'm not interested in removed. Would be a huge time saver.

jonny,
@jonny@neuromatch.social avatar

@neuralreckoning
@roaldarboel @elduvelle
I think the danger is reinventing a whole paper indexing system, which might be fun so hey PRS welcome

elduvelle,
@elduvelle@neuromatch.social avatar

@neuralreckoning @jonny @roaldarboel This! When I used to have RSS feeds, I think each feed was a sort of keyword-based query, not just all the papers from a given journal. That way any new content that appeared was potentially relevant (and if not I could refine the “query”). I have no idea how it worked, it was a long time ago…

jonny,
@jonny@neuromatch.social avatar

@elduvelle
@neuralreckoning @roaldarboel
Now that im thinking about it this would be pretty easy to do

elduvelle,
@elduvelle@neuromatch.social avatar
jonny,
@jonny@neuromatch.social avatar
elduvelle,
@elduvelle@neuromatch.social avatar
dstephenlindsay,
@dstephenlindsay@mastodon.social avatar

@jonny @elduvelle @roaldarboel Publishing is straightforward. Attracting readers is difficult.

jonny,
@jonny@neuromatch.social avatar

@dstephenlindsay @elduvelle @roaldarboel not too concerned w/ that, making something that's self-deployable so ppl can make their own feeds if they want em, not trying to make a one-platform-to-rule-them-all :)

foaylward,
@foaylward@genomic.social avatar

@jonny @elduvelle I always wondered why the enhanced PDF readers were so prevalent even though they are super clunky and take forever to load.

jonny,
@jonny@neuromatch.social avatar

@foaylward
@elduvelle
Fruit of the adversarial industry! Thank you surveillance capitalism for silently redefining scientific practice!

neuralreckoning,
@neuralreckoning@neuromatch.social avatar

@jonny @elduvelle the phrase "maximally fundable research" might just be the most efficiently depressing way of describing what's wrong with science.

lili,

@jonny @elduvelle
I'm not sure what you mean about RSS feeds being bad? eLife has some great RSS feeds: https://elifesciences.org/alerts
Similarly for nature neuro ( https://www.nature.com/neuro/web-feeds ) or most journals. The trick is to look up "journal name rss" on your favorite search engine. Admittedly I only subscribe to the eLife ones, subscribing to science or nature anything is too much of a firehose for me.

You can follow any mastodon account with RSS.

For more broad science news, phys.org has some nice feeds that don't feel like firehoses: https://phys.org/feeds/

I follow a bunch of neuro blogs with RSS, but sadly most of them are defunct now... Still, I hope that we can come back to blogging!

jonny,
@jonny@neuromatch.social avatar

@lili
@elduvelle
Definitely pro RSS, im saying many journals have shut down their feeds to corral ppl onto their platforms

briansmall,

@elduvelle I’ve used Inoreader for years. It has a few ways to create feeds from pages that don’t have rss services.

elduvelle,
@elduvelle@neuromatch.social avatar

@briansmall you can do that? 👀 Is there a tutorial for this somewhere?

briansmall,

@elduvelle I just checked and the ability to monitor webpages for changes is a paid feature unfortunately (I have a pro account).

https://www.inoreader.com/blog/2021/04/monitor-web-pages-for-changes-with-web-feeds.html

elduvelle,
@elduvelle@neuromatch.social avatar

@briansmall thanks for checking!

stfn,
@stfn@fosstodon.org avatar

@elduvelle self-hosted FreshRSS instance

feinschmeckergarten,

@elduvelle On my laptop, I use Thunderbird with its integrated RSS reader and on the web the app News for Nextcloud.

elduvelle,
@elduvelle@neuromatch.social avatar

@feinschmeckergarten how do you synchronize the two? (Or maybe you don’t)

saili,

@elduvelle Feedme for Android and Reeder5 for IOS. Both in combination with FreshRSS.

elduvelle,
@elduvelle@neuromatch.social avatar

@saili do you keep them synchronized? If so, how?

roaldarboel,

@elduvelle I use @NetNewsWire - as an Apple user it’s absolutely amazing (and all my preferred journals still keep RSS feeds)☺️.

landesfeind,

@elduvelle If you can and want to self-host, I recommend Tiny Tiny RSS. Slick and fast web-gui and even multi-user. Most important (for me), is the nice Android App. https://tt-rss.org

I use RSS a lot. As others said: not every journal or website supports it (well). But a sufficient number do and that is enough for me. M more that many sources do not prominently link their feeds but you often find links in the HTML code... guess their own dev people add them for their own interest 😉

landesfeind,

@elduvelle Today I found this in my timeline and remembered our conversation here. Maybe you find it useful?

https://genart.social/@twilliability/111688775264827884

https://rss-parrot.net/

elduvelle,
@elduvelle@neuromatch.social avatar

@landesfeind hmm I don’t see myself using Mastodon to follow RSS feeds but that’s still good to know (and quite cool) - thanks!

rupertoverall,
@rupertoverall@fosstodon.org avatar

@elduvelle PubMed and bioRxiv both maintain n RSS feeds (and quite a few journals still do).

Thunderbird has built-in RSS support. That's what I use.

elduvelle,
@elduvelle@neuromatch.social avatar

@rupertoverall Yes, pubmed would be ideal for this if it didn’t take weeks to update…

rupertoverall,
@rupertoverall@fosstodon.org avatar

@elduvelle If you want up-to-the-minute announcements of new papers, then waiting until things are listed in PubMed indeed won't cut it for you.
I have been looking for better solutions to this issue myself - I will post any successes I come across.

caiocgo, (edited )
@caiocgo@mastodon.social avatar

deleted_by_author

  • Loading...
  • elduvelle,
    @elduvelle@neuromatch.social avatar

    @caiocgo do you mean Newsblur? I think I used to use that a looong time ago, and might just come back to it, although now that I learned that Zotero has an integrated RSS reader I might just use that instead. But it looks like I should also check out Flipboard (have you tried it? Do you prefer it to Newsblur?)

    CCochard,
    @CCochard@mastodon.social avatar

    @elduvelle I don't know if this translate to your field. I receive an email with the title and abstract of all preprints submitted to arXiv cond-mat. In my field a lot of people would submit a preprint either at submission or after acceptance.
    It's not all papers but gives an ideal idea.
    (also most preprints are really close to the published version, so not a big deal if it hasn't peer-reviewed)

    elduvelle,
    @elduvelle@neuromatch.social avatar

    @CCochard that seems a bit overwhelming 👀 the nice thing with the RSS feed of a journal (hopefully this includes the preprint servers) is that - if I remember well - you can filter according to specific keywords!

    CCochard,
    @CCochard@mastodon.social avatar

    @elduvelle that's what I thought too, but it's actually manageable. About 15-20 articles per day, just reading the titles take me 5 min or so.
    ArXiv also has a rss feed of articles but I find that more overwhelming as there are loads and it's harder to filter through.
    Honestly it's a time I like in my day, 5-10min with a cup of tea just chilling looking at what is being done in my field, what are the interests, what's picking up, etc.

    elduvelle,
    @elduvelle@neuromatch.social avatar

    @CCochard Hmm, that does seem nice ☺️

    syderiaos,
    @syderiaos@piaille.fr avatar

    @elduvelle I use Feedly. At one point for work we used The Old Reader, which had the same look as the Google Reader of old. I don't know if that still exists.

    elduvelle,
    @elduvelle@neuromatch.social avatar
    elduvelle,
    @elduvelle@neuromatch.social avatar

    I think I used to use #Newsblur (https://www.newsblur.com/) like 15 years ago… is it still good?

    BoydStephenSmithJr,
    @BoydStephenSmithJr@hachyderm.io avatar

    @elduvelle I still have aKregator installed, but I don't check it much. I know a lot of the feeds I had went offline, and some just became annoying to read in the application, because they didn't contain the article, but linked to an article, and Chrome and Firefox don't know how to open a link without stealing focus (but using Konqueror was an exercise in how broken the web can be.)

    EverydayMoggie,
    @EverydayMoggie@sfba.social avatar

    I'm just using the one that's built into . It works and lets me customize how the text looks. My only gripe is that audio stops if the tab loses focus.

    @elduvelle

    elduvelle,
    @elduvelle@neuromatch.social avatar

    @EverydayMoggie interesting, I wonder if has something like this…

    EverydayMoggie,
    @EverydayMoggie@sfba.social avatar

    I'm afraid I don't know much about Firefox, sorry. The Vivaldi people are on Mastodon, should you need to ask them about their feature.

    @elduvelle

    Vivaldi,
    @Vivaldi@vivaldi.net avatar

    @elduvelle

    Yes, we're indeed here and we do recommend giving our RSS reader a try. :tony_wee:

    https://vivaldi.com/features/feed-reader/

    @EverydayMoggie, audio shouldn't stop when you switch tabs. 🤔 Could you check Settings > Tabs > Tab features > Mute Tab Audio and see if changing the setting there improves things.

    tezoatlipoca,
    @tezoatlipoca@mas.to avatar

    @elduvelle i use YARR, its a barebones single exe aggregator i run on my blog server... then access it via browser from my devices. Its a bit abandonware but it beat the competitors as i could run it on a custom port.

    elduvelle,
    @elduvelle@neuromatch.social avatar

    @tezoatlipoca oh, I haven’t reached the blog step, or the running-my-own-server step yet… but it sounds cool :)

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