@lwpembleton@genomic.social
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lwpembleton

@lwpembleton@genomic.social

Genomic Breeding Scientist ๐Ÿ‘จโ€๐Ÿ’ป๐Ÿงฌ | Global Strategic Science Manager โ€“ Seed Company ๐ŸŒฑ| Nextflow Ambassador | Timezone variable ๐Ÿ•’๐ŸŒŽ | Dad | ๐Ÿ‡ฆ๐Ÿ‡บ #RStats / #Nextflow / #AWS / #Genomics / #Bioinformatics / #GenomicBreeding / #GenomicSelection

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lwpembleton, to privacy
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So my plan with my current provider expires soon and Iโ€™m thinking of moving to . I like the idea of getting, as part of the plan, extras such as Proton mail - get some control and over my email accounts (away from Gmail). However, I am a little worried that if I create multiple email addresses I essentially lock myself into Protonโ€™s paid planโ€ฆ Losing email addresses would be an unnecessary nightmare to manage ๐Ÿค”
Has anyone else switched to Proton to manage their VPN & emails?

lwpembleton,
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@liampomfret kept separate to ensure no possible connection/linking of the IDs or because you prefer Mullvad as a VPN?

lwpembleton, to random
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Does anyone know if this is an error on ? I went to install the {multcompView} package only to have the error returned:
package โ€˜multicompViewโ€™ is not available for this version of R
So I naturally checked on CRAN what version of R it Depends on, and to my suprise, nothing was listed ๐Ÿค” I would have thought listing the R version under Depends would be a hard requirement and would have failed CRAN checks otherwise.

https://cran.r-project.org/web/packages/multcompView/index.html

lwpembleton, to random
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Crashing a user's R session due to license validation errors is not an acceptable function. A license check should never terminate a whole session, even if the package thinks the license is already in use.

video/mp4

lwpembleton, to random
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Does anyone know the appropriate way to use a variable as a column name in dplyr::filter()

lwpembleton, to technology
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Every time I restart my laptop OMG itโ€™s like bliss serenity ๐Ÿฆ‹ as the fans turn off for 30 seconds. I love my #Dell XPS, but I donโ€™t know what the flip they did with the airflow and seemingly poor coolingโ€ฆ #technology

lwpembleton, to programming
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njtierney, to random
@njtierney@aus.social avatar

Hi folks!

I've run out of time this week to do public package review, but I'm keen to do this next week on the 28th, Australia time,

https://aus.social/@njtierney/112087675371133644

I'm going to review @rmflight 's

pkg - ICIKendallTau
https://github.com/MoseleyBioinformaticsLab/ICIKendallTau

Will post more details soon - let me know if anyone would like to co-host :)

lwpembleton,
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@njtierney @rmflight fantastic that you are doing this again ๐Ÿ˜ƒโœ…its in the calendar - I will be there.

lwpembleton,
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@njtierney @rmflight according to this post you just need 50 subscribers to have 1 guest to co-stream with you. Seems like you meet the requirement, however that post was from 2023, and Google changes its product offerings, settings etc, more often than one changes their underwear.
Do you know if this option/setting was there?

https://www.theverge.com/2023/2/3/23584197/youtube-go-live-together-collaboration-livestream-guest-host-podcast

lwpembleton,
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@njtierney @rmflight yeh good point, it needs to be on desktop to be any use. Hmmm ๐Ÿค”

grrrck, to random
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Iโ€™m learning to accept that is dinner a series of snacks for a group of people who collectively hate everything Iโ€™ve made.

lwpembleton,
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@grrrck itโ€™s always the meals you put the most effort into aswell. The number of times the plain pasta pot is preferenced over the pasta + sauce & meat is disappointing.

lwpembleton, to programming
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What is your preferred style for naming directories and files, hyphens or underscores to separate words? I notice a lot of people use hyphens and one argument is it is easier to read, however underscores offers the benefit of a double click highlights the whole file name or directory name.

lwpembleton, to random
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I didnโ€™t realise base R had improved their default colour palettes, have been used to using ggplot and/or providing an external palette. A welcomed updated ๐Ÿ‘

https://journal.r-project.org/articles/RJ-2023-071/

lwpembleton, to random
@lwpembleton@genomic.social avatar

Need to add non-CRAN packages as a dependency to your package?

Add the โ€˜Remotesโ€™ section to your description so that it is downloaded and installed before your package.

More info here ๐Ÿ‘‡
๐Ÿ”—https://cran.r-project.org/web/packages/devtools/vignettes/dependencies.html

njtierney, to random
@njtierney@aus.social avatar

Hey folks,

Tomorrow at 12pm Sydney/Melbourne time we will be trying out the first round of this live package review. Currently we have myself, @milesmcbain , and @adamhsparks joining for review, which is very exciting!

We will be looking at
@jadeynryan 's
{soils} package: https://github.com/WA-Department-of-Agriculture/soils

And if there is time,
@ngiangre 's {kidsides} package: https://github.com/ngiangre/kidsides

This link will show you what time that is in your timezone: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Twitch+R+package+review&iso=20240121T12&p1=152&ah=1&am=30

Thanks to everyone who has been very helpful with sharing resources and experience and enthusiasm: @tanho, @wviechtb, @michcampbell and @hye
I haven't had as much time to iron out the twitch stream as I would like so hopefully it all works out! I'll post a link here when I've got it working.

Thanks for everyone's help!

lwpembleton,
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@njtierney @milesmcbain @adamhsparks @jadeynryan @ngiangre @tanho @wviechtb @michcampbell @hye that was fantastic! Look forward to hopefully more of them. Thanks to Nick, Adam & Miles for their brilliant suggestions and insight. Also big thanks to Jadey for sharing your package for review - looks like a great package and it is clear you have invested a lot of time and passion.

lwpembleton, to datascience
@lwpembleton@genomic.social avatar

I like reading ๐Ÿ“– about other people's computer setups, tools and tech they use as part of their daily work in ๐Ÿ“Šand ๐Ÿงฌ๐Ÿ–ฅ๏ธ Anyone got any good links? ๐Ÿ”—

lwpembleton, to random
@lwpembleton@genomic.social avatar

Hey, champions! Sometimes you might want to consider reordering ๐Ÿ”€ your boxplot groups to more clearly illustrate the differences between them. You can easily achieve this with the reorder function within your aesthetic mappings. Check out my blog for a full working example and code.

๐Ÿ”— https://lpembleton.rbind.io/ramblings/R/#order-a-boxplot-for-improved-across-axis-comparisions

lwpembleton, to random
@lwpembleton@genomic.social avatar

I Just noticed that @bioconductor chose to use the genomic.social mastodon server. I think that is a strong testament to the great work James Ferguson (@Psy_Fer_) has done setting up and managing this instance. Thanks James!

Cmastication, to random
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One of the nifty author perks with Oโ€™Reilly is getting a Safari Online subscription. Today I discovered that the subscription covers audiobooks as well!

lwpembleton,
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@Cmastication are they read by Stephen fry?

lwpembleton, to Nostalgia
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Does anyone else remember getting the Age of Empires game โš”๏ธ in their cereal box ๐Ÿฅฃ back in the 2000s? Definitely the best cereal box promo!

hrbrmstr, to random
@hrbrmstr@mastodon.social avatar

Handmade (including the physical โ€œiconsโ€) framed Programmerโ€™s Alphabet from #2 (she said the template is available if anyone wants it).

This explains some very odd questions I was getting from her for the last six months.

lwpembleton,
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@hrbrmstr That is fantastic! A true present where a lot of meaning and thought has gone into it.

lwpembleton, to ubuntu
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The new Ubuntu 23.10 wallpaper is a step up from recent versions ๐Ÿ–ผ๏ธ๐Ÿ’ป๐Ÿ‘

lwpembleton, to random
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๐Ÿค” Total memory blank! What's the name of that R package for generating console plots on graphics-less setups like remote servers?

lwpembleton,
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@gaborcsardi Thanks! NostalgiR was the one I was thinking of from back in my PhD, but I will take a look at txtplot as well ๐Ÿ‘

lwpembleton, to vscode
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Iโ€™m enjoying this VS Code extension right now ๐Ÿ‘ No more struggling to find all the TODO or FIXME comments you put in your scriptsโœ…
๐Ÿ”— https://marketplace.visualstudio.com/items?itemName=Gruntfuggly.todo-tree

lwpembleton,
@lwpembleton@genomic.social avatar

This might provide similar functionality to RStudio environments.
https://github.com/dokato/todor

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