MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

A final reminder: we are currently advertising three jobs! Applications close on 15 May. Details and links in the thread ⬇️ https://genomic.social/@MelBioInf/112295817677021230

Elendol, to bioinformatics
@Elendol@hachyderm.io avatar

Spending the whole month solving data crimes, a lot of dead bodies, many suspects identified, rehabilitation won't be a possibility for many...

sotneStatue, to bioinformatics
@sotneStatue@fosstodon.org avatar

Today I'll be using #R for RNAseq analysis for the first time, wish me luck

bffo, to bioinformatics
@bffo@mastodon.social avatar

You do #Bioinformatics in #Montréal? Elsewhere in the world? You lead a group? Maybe invite your students be volunteers at the largest International Bioinformatics Conference? #ISMB2024

https://www.iscb.org/ismb2024/general-info/apply-to-be-event-staff

bffo, to bioinformatics
@bffo@mastodon.social avatar

Remembering the first Canadian Workshop: … we used to use mouse pads back then! This was a useful one for those didn’t know their standard genetic code by heart

Mehrad, to bioinformatics
@Mehrad@fosstodon.org avatar

>> Chan Zuckerberg CELL by GENE Discover (CZ CELLxGENE) is a collection of free and open-source tools for finding, querying, analysing, downloading and publishing single-cell data. As of April, it includes some 85 million single cells and 1,317 data sets covering 844 cell types, curated and uniformly processed

https://www.nature.com/articles/d41586-024-01217-y

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

We've answered ALL of our current design and engineering aims!

We're also looking forward to talking to some influential people, and forming some great agreements.

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

necrosis, to science German
@necrosis@chaos.social avatar

Leute. Ich hab sooooooooooo was geiles entdeckt.

Kennt ihr schon https://www.olivetin.app/ ?

Damit kann man Tools eine verpassen. 😍

Ok, das würde sich auch mit von umsetzen lassen. Aber dennoch.

Für unsere Beschäftigten, die eher Windows gewohnt sind kann ich so Shell Tools leichter zugänglich machen. Das ist so toll. 😍

Für sicher auch einen Blick wert. :3


rmflight, to bioinformatics
@rmflight@mastodon.social avatar

What RNA-Seq datasets are everyone using for RNA-Seq differential analysis workshops, using {DESeq2} or {limma} ?

Two or three categories, and ideally a good (4 or 5+) number of replicates, human or mouse?

We have some new methods in ontology enrichment, and we really could use some more datasets to try them on.

I've found the {airways} dataset, and lung adenocarcinoma from {recount3} (as an easy pull). Looking for others. TIA.

davelunt, to bioinformatics
@davelunt@genomic.social avatar
MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

We are hiring! Melbourne Bioinformatics is expanding our team by recruiting into three new positions. This is your chance to become part of a dynamic team of expert bioinformaticians who are at the forefront of Australian training, outreach, and research.

All three roles are full-time, continuing positions based at the University of Melbourne's Parkville campus. Applications close 15 May 2024. For more information, including application instructions, follow the links below.

nmronline, to chemistry
@nmronline@mstdn.science avatar
thatdnaguy, to linux
@thatdnaguy@genomic.social avatar

If you work on the command-line in Linux a lot, find + exec is your friend.

"I have many copies of MYFILE because my project got sloppy over time. Are they different?"

find . -type f -readable -name "MYFILE*" -exec md5sum {} ;

Also handy for if temporary files get out of control and rm chokes.

find . -type f -readable -name "*.temp" -exec rm {} ;




nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Thank you friends!

Your follows and interactions truly helps us to understand what ELEMENTS we need to engineer and integrate into our NMR data analysis platform.

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

computingnature, to bioinformatics
@computingnature@neuromatch.social avatar
nmronline, to baking
@nmronline@mstdn.science avatar
lambdamoses, to python
@lambdamoses@fosstodon.org avatar

I'm thrilled to announce a new preprint from our lab, with in depth analyses showing that Seurat and Scanpy give drastically different results for ostensibly the same data analysis tasks: https://www.biorxiv.org/content/10.1101/2024.04.04.588111v1

BOSC, to opensource
@BOSC@genomic.social avatar

TWO WEEKS LEFT to submit your abstract to BOSC! The deadline is April 19 by the end of the day Anywhere on Earth. (Sorry, no extensions.) We welcome submissions on all aspects of and

If you are hoping for a talk, please submit a 2-page pdf; if you only want a poster, we only need a short (250-word) abstract. Please see https://www.open-bio.org/events/bosc-2024/submit/ for more information and a button for submitting.

F2erron, to bioinformatics French
@F2erron@fediscience.org avatar

Hello sugar people of the :fediverse: . My former collegue Bernard Henrissat now in 🇩🇰 is looking for a student in a Marie Sklodowska-Curie 🇪🇺 training network to work with him at the Technical University of Denmark. More info:
https://euraxess.ec.europa.eu/jobs/201030
The deadline for application is May 31st, 2024 and the job will start in November.

Skills desired: , general biology (++ ) and fluency in 🇬🇧.
Eligibility: the candidate should not have worked in 🇩🇰 before.

xgrau, to bioinformatics Catalan
@xgrau@ecoevo.social avatar

We have two open positions to work on the bioinformatics team of the Biodiversity Cell Atlas initiative, at CRG (Barcelona).

Please contact Arnau Sebé if you're interested, as the deadline is next week — 10th of April!

Both positions are funded by the Moore Foundation.

nmronline, to bioinformatics
@nmronline@mstdn.science avatar
nmronline, to bioinformatics
@nmronline@mstdn.science avatar
nmronline, to bioinformatics
@nmronline@mstdn.science avatar
naturepoker, to bioinformatics
@naturepoker@genomic.social avatar

Yikes - this looks like a pretty serious issue. Especially considering high chance that the original author of the package might have been behind the backdoor attempt.

I know quite a few packages also need xz for compilation. Hate that we need to worry about stuff like this more from now on.

https://arstechnica.com/security/2024/03/backdoor-found-in-widely-used-linux-utility-breaks-encrypted-ssh-connections/

nmronline, to bioinformatics
@nmronline@mstdn.science avatar
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