xtaldave, to strucbio
@xtaldave@xtaldave.net avatar

:geordi_no: Alphafold3. Not FOSS. Not FAIR. Public version has important features redacted.

:geordi_ye: OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization | Nature Methods

Faster. FOSS. FAIR.

@strucbio

https://www.nature.com/articles/s41592-024-02272-z

albertcardona,
@albertcardona@mathstodon.xyz avatar

@xtaldave @strucbio

OpenFold is a big deal. And a great showcase for free open source software, enabling scientists to improve on each other's work in the best scientific tradition.

Source code: https://github.com/aqlaboratory/openfold

Open data for training: https://registry.opendata.aws/openfold/

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

It's my birthday! 🥳

In celebration, our senior sow signs off our new #NMR software solution!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #GuineaPig #LifeSciences #metabolomics #NMRChat #NMROnline #physics #spectroscopy #StructuralBiology

xtaldave, to structbio
@xtaldave@xtaldave.net avatar

The AlphaFold3 Transparency and Reproducibility letter and signatories zenodo page

@structbio
https://zenodo.org/records/11192369

xtaldave, to strucbio
@xtaldave@xtaldave.net avatar

Open letter to Nature editors complaining about the lack of code availability for AF3 (Publishing code is normally a prerequisite for publishing in Nature)

(Yes, I am fully aware of the irony of using a Google form to do this - not my idea, just sharing.)

@strucbio

https://docs.google.com/forms/d/e/1FAIpQLSf6ioZPbxiDZy5h4qxo-bHa0XOTOxEYHObht0SX8EgwfPHY_g/viewform

xtaldave, to science
@xtaldave@xtaldave.net avatar

Alphafold 3 server has dropped, kids. https://golgi.sandbox.google.com/about

Can do select small mols, PTMs, Nucleic acids and ions.

@strucbio

xtaldave, to strucbio
@xtaldave@xtaldave.net avatar

Identifying and avoiding radiation damage in macromolecular crystallography
@strucbio
http://scripts.iucr.org/cgi-bin/paper?qq5002

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

We've answered ALL of our current design and engineering aims!

We're also looking forward to talking to some influential people, and forming some great agreements.

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to chemistry
@nmronline@mstdn.science avatar

– ELECTRO (available soon)

Add your software to the growing list of and titles featured in the ELECTRO library, today!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Thank you friends!

Your follows and interactions truly helps us to understand what ELEMENTS we need to engineer and integrate into our NMR data analysis platform.

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to baking
@nmronline@mstdn.science avatar

We hope everybody has a great time at !

Now, who would like a slice of homemade date and walnut cake?

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Happy Easter!

@bioinformatics @biophysics @chemistry @compchem @gardening @nmrchat @plants @plantscience @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Happy Easter!

@bioinformatics @biophysics @chemistry @compchem @gardening @nmrchat @plants @plantscience @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

With his new book, Reuben ruminates on special relativity!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available soon)

Another software engineering breakthrough!

@gubouvignies @bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Indiana Jones and the Quest for the Third Edition!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available soon)

We're getting faster, and so is ELECTRO, with ChemEx datasets now loading at lightspeed!

@gubouvignies @bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

#NMROnline – ELECTRO (available later this year)

Yesterday, we revealed the complete list of software that will be available in our web-based #NMR data analysis platform.

Today, we're… 👇

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

#ACSSpring2024 #biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMRChat #physics #SoftwareDevelopment #SoftwareEngineering #spectroscopy #StructuralBiology #WebDev

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

Our web-based, data analysis platform, is professionally engineered, features bespoke functionality, and a library of popular software!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

We hope everybody is having a fantastic time at !

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

xtaldave, to strucbio
@xtaldave@xtaldave.net avatar

Efficient in situ screening of and data collection from microcrystals in crystallization plates

From Diamond VMXi beamline.
@strucbio

http://scripts.iucr.org/cgi-bin/paper?wa5148

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

🎶 Relax, we're on it, ELECTRO's coming along. 🎶

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

"We've just released this major update as version 1.1, and we couldn't have done it without your help."

Glad we could help. 😎

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

We have now built the NmrPipe workflows for NUS processing using Smile and IST!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

We have now built the NmrPipe workflows for NUS processing using Smile and IST!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

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