I am going to give MaxQuant on Linux a try, what could possibly go wrong...
I ended up writing a custom docker image because the (official?) conda environment is broken (thus the docker image on biocontainer is also broken). This is very fun because MaxQuant is a freeware we have to manually download from a generated link.
But, I hear you, the test command for the conda environment works. Well yes. You can use --version and it works, so the test passes... #teammassspec#bioinformatics
On the cover this month, a “juicer” becomes a visual metaphor for a new method, introduced in Waters et al, that uses #generative adversarial neural networks to "squeeze" the maximum amount of useful information out of gene expression data from a small set of biological samples.
A professionally engineered #NMR data analysis platform, built with leading web tech, features diverse functionalities, and a library of popular software.
It's 2024. Most of #bioinformatics is yet to come and the best we can offer future generations of scientists is idiosyncratic R-scripts, massive Nextflow pipelines and file formats such as FastQ? We have to do better.
Whilst we're engineering #NMROnline – ELECTRO, it's a good time to contact us with #NMR software, features and functionality suggestions, to help us build the platform YOU want!
I like reading 📖 about other people's computer setups, tools and tech they use as part of their daily work in #datascience 📊and #bioinformatics 🧬🖥️ Anyone got any good links? 🔗
I've been accepted to Northeastern University for graduate school.... again! 😅 As I continue my #PhD in Computer Science, I'll also be taking courses in pursuit of a Graduate Certificate in #Bioinformatics, concurrent to my computer science dissertation on #datavisualization tools for high-dimensional data exploration. Super excited to see where this next chapter leads!