DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

FLiRT-ing with a new COVID-19 wave | Canberra Times

"Our immune memory isn't as fitted to this new variant so it can make us a bit more vulnerable," Professor Bennett said 🤦‍♂️

@auscovid19

Source: https://www.canberratimes.com.au/story/8632649/what-to-know-about-the-new-covid-19-flirt-variant-in-australia

The FLiRT name derives from the technical names of the mutations in the genetic codes of the variants. A winter wave Deakin University's chair of epidemiology, Catherine Bennett said these JN.1 sub-variants have been in Australia since February but were likely to increase into winter. "This looks like the early days of our winter pandemic, it will be driven by these K variants, the FLiRTs," she said. "FliRT variants take up about half of the variants circulating, and if they take off they might push JN.1 into the background." Professor Bennett said the severity of the variants was similar to its parent strain but that disease-impact depended on the individual. "Our immune memory isn't as fitted to this new variant so it can make us a bit more vulnerable." Professor Bennett said while repeat waves of COVID-19 were expected, there would be larger gaps between waves. "With each wave we have seen fewer people unwell with the virus and fewer deaths associated with each wave," she said. How Australians could prepare Professor Bennett said people vulnerable to severe disease or those who have managed to avoid infection should consider if they are eligible again for a booster vaccine. "We are seeing a rise in infections, by June we may well have quite a few cases, and if you get the vaccinations now it prepares you," she said.

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar
DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

When could Australians have access to a new COVID-19 vaccine? | SBS News

On Tuesday, the WHO and EMA recommended an update to COVID-19 vaccines to target the JN.1 variant.

Professor Raina MacIntyre was part of the WHO team which made its recommendation.

Vaccines using mRNA technology can be updated and manufactured in under two months according to MacIntyre and Griffin, but regulatory bodies need to provide the green light, which can lead to delays.

"The speed of the process, from [Australian Technical Advisory Group on Immunisation] recommending it, to [Therapeutic Goods Administration] approvals to roll out is one challenge, which adds to the delay in getting vaccines into arms," MacIntyre said.

@auscovid19

Source: https://www.sbs.com.au/news/article/when-could-australians-have-access-to-a-new-covid-19-vaccine/lyng5ccva

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

Novavax Prepared to Deliver Protein-based Non-mRNA JN.1 COVID-19 Vaccine in Line with WHO Recommendation this Fall.

"Our most recent nonclinical data have demonstrated that our JN.1 vaccine candidate induces neutralization responses to JN.1, JN.4, JN.1.11.1, JN.1.7, JN.1.13.1 and JN.1.16 strains. Our JN.1 vaccine candidate also produces polyfunctional cellular CD4+ T cell responses to a range of omicron strains including JN.1 and JN.1.11. These responses indicate once again that our vaccine technology can induce broadly neutralizing responses against multiple variant strains, including circulating forward drift variants."

#Novavax #COVIDvaccine #JN1 @auscovid19

Source: https://ir.novavax.com/press-releases/Novavax-Prepared-to-Deliver-Protein-based-Non-mRNA-JN-1-COVID-19-Vaccine-in-Line-with-WHO-Recommendation-this-Fall

SARS2PA, to H5N1

Update for 4/1/2024!

Good April Morning SARS2PAians!

I hope your spring is healthy. 💐💐💐


VOCs

JN.1 and JN.1.4 stil dominate the leaderboard, but scientists are especially watching a groiup of new mutations including JN.1.18, JN.1.13, KP.2, JN.1.16, and KQ.1.: https://ibb.co/6RvHcZR

Some of these are moving FAST despite the already-very-fast mutations on the landscape.


Wastewater

We've reached a level of SARS2 material in wastewater low enough to match previous years (2020, 2021.): https://ibb.co/DMyG0k4


CDC

Quite a lot of counties with new hospital admits, especially the Western half of the State. The Southwest corner by Greene Co and from Centre on over to Erie Co and Jefferson are HIGH on the newest chart.: https://ibb.co/m6KYR0Z

The Inpatient Beds chart looks good except for some increases in Lawrence and around Cameron Cos.: https://ibb.co/SPm1wJt

The ICU bed chart looks very good! Most counties are having decreases! However some increases up by Pike Co and significant increases in Franklin and Fulton Cos.:https://ibb.co/sKdK54P


Research

Tuberculosis after recovering from COVID-19 is becoming more common.: https://ibb.co/ZxZ7kHY

Reactivation of underlying pathogens is NOT NEW. We know this factually from the chicken pox/shingles pathogen.

Also, measles is known to reset the ENTIRE immune system and bring protection from everything down to zero, potentially leaving reactivation of underlying pathogens, which is by levels of magnitude more complex than the physical disability it can cause and makes it imperative that you VACCINATE YOUR KIDS.: https://ibb.co/cbFXrRw

Again: NONE of this is brand new, and COVID19 along with other known pathogens, seems to potentially weaken the immune system enough to reactivate underlying pathogens.


Non-SARS2 Pathogens

COVID and RSV thankfully have been downgraded on WastewaterSCAN to "Medium" and "low" respectively.: https://ibb.co/k2SpgLR

However, quite a number of pathogens are still ranking in the HIGH level: FluA, FluB, Human Metapneumovirus (HMPV) and the gastro pathogens Norovirus and Rotavirus are still out there.

HMPV often presents with a rash and is related to RSV:

https://www.cdc.gov/ncird/human-metapneumovirus.html
https://my.clevelandclinic.org/health/diseases/22443-human-metapneumovirus-hmpv

The prevention for all these respiratory diseses is the same!

Be conscious of crowds.

Wear a mask in places with low air filtration.

Keep the air clean!

Stay home if you are sick!

For norovirus and rotavirus, it's important to wash hands with soap and warm water for 20sec.

:ms_arrow_right: DO NOT depend on gloves and hand sanitizer to control Norovirus, the particles are very resistant to alcohol.


H5N1

Nothing above here has scientists sitting up at attention right now except one thing: H5N1 bird flu.

H5N1 has jumped to dairy cattle (after infecting numerous other species such as seals, fox, deer, etc.), has been found in cattle in TX, KS, MI, NM, and now Idaho.: https://ibb.co/1JgGY2v

Before now, almost all transmission was bird-to-other-species. "Cow-to-cow transmission cannot be ruled out" and will be a disaster for the food supply if not controlled.: https://ibb.co/mDKVZ7R

There is resistance amongst dairy farmers in the US and in Europe to get their cattle tested.

The absolute worst case scenario is if it "makes the leap" to pigs. That means, if genetically it mutates (like COVID-19 is doing) to be able to:

---Infect pigs.

---Gain capability of pig-to-pig transmission.

The genetic "leap" from bird to mammals was very large, and will also be the "leap" from cattle to pig.....but the "leap" from pigs and ferrets to humans after that will be really, really small.

This would be the same route the Spanish Flu took 106 years ago: Birds -> pigs -> humans.

It is...really not a good time to consume unpasteurized, raw dairy products.

:ms_arrow_right: I'm spending a lot of words on this because so far, this thing has a 50% kill rate**. That is, 1 out of every 2 people who contract H5N1 will die.

I don't know what else to say. We MUST push for thorough farm testing, biosecurity, and intense transmission research.

Stay safe, I hope you had a GREAT holiday, and don't forget to use some form of source control in your daily adventures! 💐

!!!

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

🇺🇸US: COVID-19 Variant JN.1 loses ground to subvariant, JN.1.13 | usnews.com

"JN.1.13 has been increasing in recent weeks, rising from nearly 2% of new cases last month to nearly 11% over the past 2 weeks, according to CDC estimates"

@auscovid19

Source: https://www.usnews.com/news/health-news/articles/2024-03-29/covid-19-variant-jn-1-loses-ground-to-subvariant-jn-1-13

DenisCOVIDinfoguy, to Japan
@DenisCOVIDinfoguy@aus.social avatar

🇯🇵Japan: COVID-19 and Flu cases remain high in Japan.

"Experts urge people to continue taking basic countermeasures such as the use of face masks, hand-washing and ventilation"

@auscovid19

Source: https://www.nippon.com/en/news/yjj2024022300492/

SARS2PA, to random

Update for 2/23/2024!

Good Morning SARS2PAians! ❄️❄️❄️

There's no new CDC stuff for today.

VOCs

JN.1 and its cousins/offspring continues to smash the leaderboard globally and in the US: https://ibb.co/xSW90JK

And here in PA: https://ibb.co/FX4VJgb

Lineage News

JN.1.11 has totally fizzled out (that's the difference between how it looks in a lab compared to actual infectivity) but there is a new variant that is being VERY closely scoured for by geneticists: JN.1.23 (that's JN One Dot Twenty-Three.)

This variant has an absolutely astounding ACE2Binding ability (which means it's easier to "stick" to lungs) + very good escape rate (which means it looks different than anything else before it and the body isn't sure how to react to it).: https://ibb.co/B45zX5B

It is definitely way beyond "uh-oh" at this point.: https://ibb.co/9T5pv5z

It has already been found on 3 continents (South America/Brazil, North America/California, and Asia/India) and also in Canada/Alberta. it's now being tracked on Rajnarayanan's Tableau chart for the US.: https://ibb.co/xMwRyyC

This also has so much binding ability, it has the most potential to even "spend" some of its infectivity on other mutations that will benefit its children, sacrificing it for more severity or more innate infectivity....which would be very bad.

The good news is that this variant has only 2 differences between it and what we're already dealing with. Despite the very good ACE2 binding, XBB.1.5 vaccines and prior infections with JN.1 should hold against it at least a little while.: https://ibb.co/42D30fZ

(Note: don't get infected to prevent infection. That's silly. There's NO sure way to know if you were infected with JN.1 unless you get your case sequenced. Get vaccinated and use source control. That's smart and NOT silly.)


Wastewater

Wastewater SARS2 material is rising in the US again. Not a good sign.: https://ibb.co/DGx889k

Regionally, all regions except the West are starting to tick upwards again.: https://ibb.co/dtKpRsK

In PA, the 5 stations that report to Biobot are showing very volatile elves, but Chester, Lackawanna, Luzerne, and MontCo are handling it. :canparrot: GOOD GOING. Source control keeps those numbers down!!!: https://ibb.co/JxZX7YC

BucksCo is on an uptick, now above national averages. Please be cautious and keep working at it for Spring!!! 💐

The PA DoH Wastewater dashboard reflects these rising levels, with levels especially rising in Monroe County. PLEASE USE SOURCE CONTROL. Wear a quality respirator, clean the air with MERV-13 or HEPA filters, and STAY HOME if you are sick!: https://ibb.co/DwtcNgd


Year-Over-Year

Want to remind everyone that this year has the highest national wastewater numbers of all COVID years at this time.: https://ibb.co/WP98zxT

(I changed the color of the 2024 year because the original color used to represent it was...pretty unseeable.)

MORE people are getting infected/reinfected more quickly, and you can see the general trend is for the absolute baseline rising throughout the year.

This is in addition to, on WastewaterSCAN, high levels of other respiratory pathogens like RSV, FluA and FluB and the gastro-disturbing (and just gross) Norovirus.: https://ibb.co/ggyxfBt

Wash hands to prevent especially non SARS pathogens.
🌊👍🌊

Wash fruits and veg too before you eat them!
🌊🍎🥒🌊

Guys, this is us on our way to a high tide that will never drop IF we don't use source control.

But if we do, we can prevent life, learning, and financial loss going into spring and have a LOVELY and healthy new season soon! 💐

[#covid #Covid19 #SARS2PA #CDC #CovidIsNotOver #Pennsylvania #PA #JN1 #JN1TwentyThree #JN123 #Norovirus #Influenza #InfluenzaB #Flu #FluB #WearAMask #CleanTheAir #VaccinesSaveLives #Wastewater #StayHomeIfSick #SourceControl #USESourceControl #COVIDSourceControl

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

🇮🇪 Ireland: COVID up by 39% in 3 weeks

Health officials have reported another rise in confirmed cases of the new JN.1 Covid variant in Ireland.

"There have been 832 COVID-19 cases confirmed as infected with the JN.1 lineage to date in Ireland. Of these cases, 269 (32.3%) were associated with outbreaks in hospital or healthcare settings.

@auscovid19

Source: https://www.irishmirror.ie/news/irish-news/covid-ireland-warning-cases-new-32068400

joshuag, to random

the JN.1 takeover is pretty stunning

DenisCOVIDinfoguy, to Japan
@DenisCOVIDinfoguy@aus.social avatar

🇯🇵Japan is likely to be experiencing a 10th wave of COVID-19 infections.

🔹Rported infection cases have increased for 9 consecutive weeks

🔹The spread is being driven by the highly contagious new JN.1 variant.

@auscovid19

Source: https://www.japantimes.co.jp/news/2024/01/29/japan/science-health/japan-covid-10th-wave/

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

"January WA’s worst month for COVID deaths in a year as new subvariant JN.1 wrecks havoc on immune system" By John Flint

@Flinty_01 @auscovid19

Source: https://thewest.com.au/news/health/january-was-worst-month-for-covid-deaths-in-a-year-as-new-subvariant-jn1-wrecks-havoc-on-immune-system-c-13365691

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DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

The emergence of JN.1 is an evolutionary ‘step change’ in the COVID pandemic. Why is this significant?

Authors: Suman Majumdar, Brendan Crabb, Emma Pakula and Stuart Turville

@auscovid19

Source: https://theconversation.com/the-emergence-of-jn-1-is-an-evolutionary-step-change-in-the-covid-pandemic-why-is-this-significant-220285

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ai6yr, to random
@ai6yr@m.ai6yr.org avatar
LEAD_Coalition, to coronavirus
@LEAD_Coalition@mastodon.world avatar
DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

🇯🇵Japan: "JN.1 may be about twice as infectious as the BA.2.86 (Pirola) omicron subvariant"

"The new variant's immune escape ability is 3.6 to 4.5 times that of the pirola strain, for antibodies created in the body following vaccination."

@auscovid19

Source: https://mainichi.jp/english/articles/20240110/p2a/00m/0na/013000c

DenisCOVIDinfoguy, to australia
@DenisCOVIDinfoguy@aus.social avatar

🇦🇺 Australia: Why this COVID variant is making hospitals full in NSW, QLD and VIC.

"Pirola can infect cells in the lower lungs and can enter cell membranes more efficiently than other versions of Omicron, leading to increased hospitalisations, a study by Ohio State University found."

@auscovid19

Source: https://www.news.com.au/lifestyle/health/health-problems/why-this-covid19-variant-is-landing-patients-in-hospital-in-nsw-qld-and-victoria/news-story/4806a818aed8de7d439c84765b8a938d

Study: https://www.cell.com/action/showPdf?pii=S0092-8674%2823%2901400-9

DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar
DenisCOVIDinfoguy, to auscovid19
@DenisCOVIDinfoguy@aus.social avatar

🇺🇸 US: A doctor has warned of the concerning effects of the Covid JN.1 variant as it rips through younger demographics and increases hospitalisations across the US.

"Unlike previous strains, JN.1 has been associated with quicker progression to severe respiratory symptoms, even in younger populations. This rapid onset challenges our healthcare systems, pushing them towards the brink of overload." - Dr. Veronika Matutyte

"The Covid JN.1 strain is not just another variant; it represents a significant shift in the pandemic's landscape. The immediate risk of JN.1 lies in its heightened transmissibility and potential for severe illness." - Dr. Veronika Matutyte

@auscovid19

Source: https://www.the-express.com/news/health/123476/new-covid-variant-hospitalizations

DenisCOVIDinfoguy, to australia
@DenisCOVIDinfoguy@aus.social avatar
DenisCOVIDinfoguy, to Victoria
@DenisCOVIDinfoguy@aus.social avatar

🇦🇺 Australia: "More than 100 Victorian nursing homes are battling COVID outbreaks, as the state faces a worsening wave of the highly contagious new strain JN.1"

@AnikaWells @mandy_squires @auscovid19

Source: https://www.heraldsun.com.au/news/victoria/full-list-of-victorian-aged-care-facilities-with-covid-outbreaks/news-story/4d945fce446f9249926ca4a7dba72bf6

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chargrille, to random
@chargrille@progressives.social avatar

This wave is already 25% above last winter's (which was the 2nd highest of the ongoing pandemic), & infection rate is still rising.

lagging indicators are also spiking acc to CDC:

hospitalizations: "up more than 20% week over week"

COVID-related deaths & ER visits: both up "roughly 13%"

"skyrocketed" in Dec

“This is what happens [when] a new, hyper-mutated strain…picks up a critical added mutation, giving it huge growth advantage”- Dr. @erictopol
https://fortune.com/well/2024/01/05/us-reachest-second-highest-covid-peak-pirola-jn1-omicron-pi-rho/?s=09

ai6yr, to california
@ai6yr@m.ai6yr.org avatar
DenisCOVIDinfoguy, to Perth
@DenisCOVIDinfoguy@aus.social avatar

Perth: "Highly-mutated Coronavirus strain ‘JN.1’ behind COVID surge in Perth and around world" - By John Flint

@CHO_WAHealth @WAHealth @Flinty_01 @auscovid19

Source: https://thewest.com.au/news/health/highly-mutated-coronavirus-strain-jn1-behind-covid-surge-in-perth-and-around-world-c-13132272

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SARS2PA, to random

Update for 1/5/2024!

Good Morning SARS2PAians!

There's not much new data as of yet, and I don't have much time to post this morning.

There's no new Biobot wastewater data, that will be updated Jan. 9th.

There's also no new CDC map data and the NOWCAST has not been updated at the time I posted this.


VOCs

The Tableau site is regularly updated after the holidays again, however.

Nationally, JN.1 flying high at over 31% of random sequencing.: https://ibb.co/Qf1vD0t

In PA,, a little slower pace but it's still at over 28% of leaderboard share.: https://ibb.co/sCmQtbH

In NY/NJ, JN.1 at over 45% of share and this is only going to go up when kids go back to school.: https://ibb.co/DkJbCXs

Please take this highly evasive, transmissible variant seriously. The latest XBB vaccine will help sorta-ok-marginally against severe disease and health care system strain but this variant is many, many mutations away from anything we currently have, so source control is best.

Wear a quality RESPIRATOR. This is increasingly VITAL as it gets colder, making leaving windows open less ideal.


Wastewater

Biobot isn't updated yet but CDC has its own wastewater info page.: https://www.cdc.gov/nwss/rv/COVID19-nationaltrend.html

Nationally, most of the contiguous States are at VERY HIGH levels. We in PA are in more moderate levels of SARS2 spread and it will be more important than ever to practice source control against JN.1 to maintan this. It will prevent straining health care systems from not only increasing FluA, FluB, etc. but also people that just didn't care to get vaccinated.: https://ibb.co/RCYyNY3

Previous vaccination formulas DO NOT protect against JN.1 at all due to antigen drift.: https://zeroes.ca/@erictopol@mstdn.social/111664708844139916

Please get the XBB version ASAP if you didn't get one.

In PA, numbers match national levels so there's no real difference here. The last 2 weeks are shaded grey as they are incomplete, so the massive dropoff in wastewater on the end there is not due to declining levels but rather data gap.: https://ibb.co/FJK3BxN

PLEASE NOTE that we are in the midst of the SECOND largest increase in wastewater SARS2 material, and even if cases aren't reflecting this in data, those cases are still out there.

Try to go virtual if you can. Crack open a window. Practice SOME form of source control until the Spring!

If we all work together we can prevent life, learning, and finanical fallout in the next few months! :canparrot: :canparrot: :canparrot:

Stay safe from COVID and also that wacky storm coming our way tomorrow! ❄️❄️❄️

#covid #Covid19 #SARS2PA #CDC #CovidIsNotOver #Pennsylvania #PA #BA286 #JN1 #HV1 #WearAMask #CleanTheAir #VaccinesSaveLives #Flu #Influenza #RSV #Wastewater

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