biopixR, has reached version 1.0.0! From its humble beginnings to the latest updates, we've worked tirelessly to bring you powerful tools for image analysis and processing.
Improved examples
New functions: importImage and scanDir
Automated parameter calculation in objectDetection
Faster computation through vectorization
Browse through our journey: from edge detection to automated calculations, parallel processing, and more!
Dominik Kutra from the ilastik team is guiding a practical session on using ilastik for #ImageAnalysis tasks during the EBI course microscopy data analysis. His top tip: For any #ImageAnalysis questions, be sure to check out image.sc! 🖥️🔬
@napari (a @NumFOCUS sponsored project) is a package I didn't know I needed, but which I can't live without anymore.
Super useful to visualize N-dimensional microscopy images (x, y, z, t, channel, scene).
I use it as a standalone viewer to visualize microscope images, but also during debugging, napari.imshow(image_array) spawns the viewer and this is so much more convenient than matplotlib!
There seems to be a healthy ecosystem of plugins too :)
What you see are cells of the eye that are important for neuron function and health. In the bottom half, where you see all the protrusions, is where the cells and neurons collide. #LoveScience
We've just finished our course on #Bioimage Analysis with #Napari 🧠🔬, which focusses on the practical application of @napari 🩻🔧. The course material is freely available on my website. Feel free to use and share it! 😙 #OpenScience#ImageAnalysis
#introduction Hello #sciencemastodon I am a cell biologist running a research group in the UK focused on membrane traffic and cell division in human cells. I aim to post mainly about science but also music, running and cycling.